Testing Trinity on Surirella brebissonii RNA data

Introduction

Testing the digital normalisation feature of the Trinity package.

Normalisation of unfiltered data

[2013-09-24]

/usr/local/trinityrnaseq_r2013_08_14/util/normalize_by_kmer_coverage.pl --seqType fq --JM 80G --max_cov 50 --left sb_rna_raw_1.fastq --right sb_rna_raw_2.fastq --pairs_together --JELLY_CPU 12 --PARALLEL_STATS --KMER_SIZE 25 --max_pct_stdev 100 --output norm_50_raw > norm_50_raw.log